I am analysing docking of my drug molecules. The autodock software is giving syntax error i.e. Sn is not autodock type ?? Suggestions needed ?

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Mitul Srivastava

hi navjot..kindly attach your input file...!!

Navjot Singh

here is the file..thanks for time mitul..!

here is the protien

hie navjot I tried opening your protein in autodock4.2 and it is opening normally, no error as such can you please specify the problem so that I may help out..

i am getting an error. When i start to run the docking through command prompt. After config command it reads " syntax error Sn1 is not autodock type, the atoms are case senstive"

Problem is related to my ligand file.

hie navjot sorry i was off for weekend...please try SN1 or sn1...in case u have tried earlier let me know...!!

yup i tried..i have found the solution. Parameters for SN atoms to be added in autodock DAT file. Then it is working now. Thanks for the time mitul

great...good luck...!!