I need HMM files of 43 marker genes specified for CPRs in order to estimate their completeness and contamination using checkm. I first tried TIGRfam database and found only 41 of them, so I tried to search in the Pfam database and found the remaining 2 marker genes. Now I need to merge them into a single file after converting the format using hmmconvert. Everything is going fine with TIGRfam database, but I am getting if I am trying to convert the format for HMMs taken from Pfam database, and I am not able to use these Pfam HMMs directly in the checkm as well. Can anyone please help me with this?

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