When we are doing molecular docking of ligands with target protein, we have to give grid values. How to select the values? is there available any software tools for the same?
AutoDock: http://autodock.scripps.edu/
Grid box values depends on your binding site coordinates, for grid parameters please review
http://autodock.scripps.edu/faqs-help/how-to/how-to-prepare-a-grid-parameter-files-for-autogrid4
there are various docking tools e.g.
https://www.swissdock.ch
https://www.dockingserver.com/
zdock.umassmed.edu/
istar.cse.cuhk.edu.hk/idock/
Thank you all
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