30 December 2022 0 8K Report

Hello everyone

I'm trying to perform HLHKA test

but I have some questions preparing input files

that is, I'm confused about the calculation of D value.

in the manual, D is described as pairwise number of between-species differences (from a random sequencefrom each species)

so should I just simply chose one sample from my ingroup and compared the number of site difference to the outgroup as the D value?

thanks for any helps!

Pei-Wei, Sun

Department of Life Science, NTNU, Taiwan

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