How to perform QC & association analysis on SNPs from multiple chromosome files?

12 June 2020 0 4K Report

Hello everyone, I have received the imputed data in the form of multiple files (Chromosome 1 to 22). There are 3 files for each chromosome (.bed, .bim, and .fam).

I would like to know how I can perform the QC and association analysis using these multiple files. Earlier I have worked on nonimputed data from single files.

Thanks in advance

Mahantesh

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