How to make cyclohexane's .gro and topology file using charmm36 force field?

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Kalindu Fernando

Hi Deepak Raj,

You can use CHARMM-GUI to generate topology and force field parameters for cyclohexane.

See the link below,

https://charmm-gui.org/

Hope this may help you !

Regards,

Kalindu

Deepak Raj

Thank you ! sir Kalindu Fernando

I want to make configuration protein at oil-water interface so I created gromacs file which is I attested below but how to create topology I don't have idea.

so please can you help me do this configuration.