Deepak Raj

3 Questions 3 Answers 0 Followers

Questions related from Deepak Raj

How to install dssp in gromacs ?

I want to calculate the "secondary structure" of protein after the MD simulation so i wanted to install "dssp "in gromacs i tried but i can't able to install i was getting error so please can...

28 April 2023 207 4 View

How to make cyclohexane's .gro and topology file using charmm36 force field?

from OPLS all-atom force field we can make simply using x2top command.

23 November 2022 3,412 2 View

What is this error when we can check the secondary structure over time using gromacs?

There are 80 residues in your selected group dssp cmd='/usr/bin/dssp -i ddWL6jqm 2>/dev/null' Reading frame 0 time 0.000 Back Off! I just backed up ddWL6jqm to ./#ddWL6jqm.1#

22 November 2022 1,796 0 View