How to identify bacterial species from whole genome sequencing data?

11 January 2023 1 2K Report

We have identified bacterial genus by using 16srrna, but I do not know how to identify the species by using wgs data. Could you please help?

Péter Gyarmati

Are you asking for a pipeline for shotgun metagenomics? MG-RAST might be the easiest start (https://www.mg-rast.org/), or Metaphlan

https://huttenhower.sph.harvard.edu/galaxy/

If you are looking for offline solutions, RTG (https://www.realtimegenomics.com/products/rtg-core) is great

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