I tried to separate casein from whey proteins by isoelectric precipitation (pH 4.6) using 10% HCl. Then, with the whey fraction, I tried to separate lactalbumin from lactoglobulin with different percentages of ammonium sulfate precipitation (30%,50% and 100%).

As you can see in the SDS-PAGE gel, casein is present in whey fraction and "contaminated" the other fractions.

Also, on ladder 3 we can see lactalbumin and lactoglobulin that was not expected with isoelectric precipitation. However, it was recently reported that β-lactoglobulin and α-lactalbumin were identified in bovine casein fractions by 2-DE combined with MS approach. This could justify the presence of lactalbumin and lactoglobulin on the casein fraction.

Can anyone tell me how to get rid of casein from whey fraction?

I'm using skimmed milk from cow.

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