Dear All,
The ligand which we have selected for our docking studies contain a Platinum atom, whose parameters need to be defined prior to docking. In this regard, could you please suggest a way to get parameters for Platinum atom type, given the fact that AutoDock version 4.0 has parameters only for H, C, N, O, F, Mg, P, S, Cl, Ca, Mn, Fe, Zn, Br and I.
ali akbar Alizadeh
Hi. I think you can use the parameters of the other metals available in autodock.
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Rashmi Shrivastava
Follow this link ........... it will be helpful. I have done same for gold.
http://autodock.scripps.edu/faqs-help/how-to/adding-new-atom-parameters-to-autodock/?searchterm=parameters
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