I did docking in AutoDock Vina and result had only best docking energy and RMSD, but no log file is generated. I want VDW energy, Interaction energy and electrostatic interaction energy. How to get this information?
Vina output does not provide all these energy components separately. If you want to compute these energy contributions, you have to compute that separately. If you have AutoDock 4 installed on your system, you can use the scoring script of AutoDock to score the binding mode generated by vina. Example command would be:
Assuming MGLTools-1.5.6 is installed in the home directory. Also note that the total energy calculated by this script will be slightly different than the energy given by Vina.
I am using windows 10 laptop for docking and I am not getting any .dlg file, just the output file with ligand poses. I am following Forli et.al protocol for autodock and huge amount of troubleshooting I have done. I think it might be issue with windows 10 itself. whats your take on this?