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Questions related from Naiju Thomas
A dimer protein crystal structure of my interest is not having 72 amino acid, but its monomer is having the full amino acid sequence. Is it possible that I can add those missing amino acid in the...
23 May 2018 2,118 5 View
While docking my ligand was found to bind on a hinge between 2 protein domain, which is 9 AA long and helps in the movement of one domain. Can it be hypothesized that due to the formation of...
12 March 2018 8,574 0 View
I was trying to dock a ligand to 2 viral protein at first and got good binding properties at very important binding sites of virus, but when I tried to dock with other 15 viruses, saw type of...
09 February 2018 2,273 2 View
While doing multiple alignment in MEGA7, I found that particular country had lots of X coming in the viral genome sequence, which lead to a difficulty in getting an output by aligning them. How...
06 February 2018 893 1 View
a plant compound was used against virus to stop the attachment of virus on the cell (in-vitro) and experimentally proved also that but the exact mechanism was not found for this. I did a blind...
23 January 2018 3,408 2 View
I did docking in AutoDock Vina and result had only best docking energy and RMSD, but no log file is generated. I want VDW energy, Interaction energy and electrostatic interaction energy. How to...
04 October 2017 2,389 3 View
The result of Autodock Vina is an output.pdbqt file, which is having only the ligand pose but no protein structure to which this ligand has docked to. If this file is opened in PyMOL and protein...
13 September 2017 3,811 8 View
