i want to find the trejectory of the solvent gromacs, any idea how would i do that
What do you mean? The trajectory is the .xtc (or .trr) file written by GROMACS. Take a look at that file with some visualiser like VMD for example.
thanks for the idea sir
The trajectory file is md.xtc which you need to visualize for RMSD, RMSF, Rg, Solvent accessible area etc ....
Regards
You can visualize final .gro file that you generated as output in VMD and then by clicking load data into molecule you have to select .xtc file and thus you can visualize trajectory for simulation run time.
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