How to find trejectory of solvent in gromacs?

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Nicola Piasentin

What do you mean? The trajectory is the .xtc (or .trr) file written by GROMACS. Take a look at that file with some visualiser like VMD for example.

Manoj Rana

thanks for the idea sir

Jobin Thomas

The trajectory file is md.xtc which you need to visualize for RMSD, RMSF, Rg, Solvent accessible area etc ....

Regards

Priyanka Ghosh

You can visualize final .gro file that you generated as output in VMD and then by clicking load data into molecule you have to select .xtc file and thus you can visualize trajectory for simulation run time.