I am doing GWAS. For this purpose I am using easyGWAS. I have to give the phenotype data file as an input for analysis. I created both whitespace and tab space files for input and saved in plant text format (used both linux and windows). My first row was a header having the following, FID IID and phenotype name. Then I have data entries. For some reasons the file I created is not getting uploaded succesfully in the easyGWAS. The am getting the following errror message: " The file should have 3 or more columns". Please help me. Thanks in advance ..
Jayesh kumar Sundaram
I understood what went wrong. I left some entries blank and that is why I got some error. Then I replaced those entries with nan and it worked.
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