Can you share more details?

Usharani Rathinam Krishnaswamy

your question has almost no details, similarly, it is almost impossible to answer based on information in your question.

Usharani Rathinam Krishnaswamy If you are looking to predict no. of contigs (obtainable) from rawdata (fastq) based on Genome features (like genome length, GC content, repeats, etc., ), then the answer is sorry we can't predict that very clearly, though there is always a ball park estimate.

EX: for a 100x data of bacterial genomes you would get

Thank you,

Is there any specific s/w available?

Does s/w means software ??, and if you are looking for software's to assembly geneome sequence raw data, you can get a lot of such tools listed here

https://omictools.com/genome-assembly-category

Thank you for your kind response

Please run the below pasted PERL code in linux terminal. It will give all the stats for the assembled contigs.

Eg: perl assemblathon_stats.pl sample.contig

Please note that we need to have the following library installed in linux. [linux skills required]

http://korflab.ucdavis.edu/datasets/Assemblathon/Assemblathon2/Basic_metrics/assemblathon_stats.pl