How to convert Bruker .BAF file to other format that can be read by "Thermo proteome discoverer" software?

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Varshasnata Mohanty

Saleh Hamed Did you try MSconvert?

Saleh Hamed

Varshasnata Mohanty Thank you for your suggestion,

Yes, I have tried it but unfortunately it didn't work

Elena V Romanova

Assuming you still work on this problem, can you export raw data as xml? If these are MALDI-TOF or MALDI-TOF/TOF data, they are not useful for proteomics analysis via database search tools anyway.

Elena V Romanova thank you for your suggestion,

no I could not export raw data as you said and they are not MALDI-TOF data

What type of the data are .BAF?

Lisa David

Can you get the raw file and convert it to MGF files?