Does anyone know how to convert Bruker .BAF data file to other format that can be read by "Thermo proteome discoverer" software?
I have tried to convert the file using "Trans-Proteomic Pipeline" but it didn't work...
Saleh Hamed Did you try MSconvert?
Varshasnata Mohanty Thank you for your suggestion,
Yes, I have tried it but unfortunately it didn't work
Assuming you still work on this problem, can you export raw data as xml? If these are MALDI-TOF or MALDI-TOF/TOF data, they are not useful for proteomics analysis via database search tools anyway.
Elena V Romanova thank you for your suggestion,
no I could not export raw data as you said and they are not MALDI-TOF data
What type of the data are .BAF?
Can you get the raw file and convert it to MGF files?
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