I'm trying to compute and represent the electrostatic potential (Poisson-Boltzmann) of some proteins to verify if they can potentially bind in their complementary interfaces. Is there any bioinformatic software to do this in an easy way?
Please check APBS and PyMOL. You could also try g potential of gromacs.
http://www.poissonboltzmann.org/docs/calculating/
I need to find out if my protein has binding sites available for intermolecular interaction with other proteins.
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