Hi, I'm doing molecular docking using autodock vina. The output file is *.log and there are thousands of them. I would like to know how can I compile all the log files in 1 and extract the compound name and the binding affinity of the best pose so that I can just paste it in excel sheet without manually going over each of the .log file and typing each value in excel. Thank you so much!
Reuben Reyes
On a Linux box you could use cat and grep:
cat *.log | grep “your_coumpound_name_here” > new_log.txt
The resulting file new_log.txt could then be loaded into excel. If you are on windows cat will work in a powershell but you would have to replace grep with findstr.
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Hakan Lane
Could use shell scripts Reuben's way, alternative write a java application
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