I am doing clustering with CLANS (MPI Bioinformatics toolkit).
After I launch CLANS from the command line as follows: java -Xmx4G -jar clans.jar -load xxx.clans
I need to initialize and start the run, so that i start seeing clusters. Now, I have the parameter "Use P-values better than" which I need to change and see. It has two corresponding boxes one is set to 1.1E-75 and cannot be change. The value in the other box can be change. But I am not sure if I should increase it from 1 or decrease it from 1.
Thank you.
Try decreasing from 1...To get a better understanding download the book in the attached screenshot available in the z-library. Then read it. The second attachment is a book that describes p-value. Read that too. Best wishes David Booth
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