I want to generate interaction fingerprint for a set of crystal structures of a protein crystalized with different ligands. How can I do this in Schrodinger? Is there any other available resources?
Now here is the update, in V. 2021-2 you need to select the complete pose viewer file from the navigator (receptor and ligands) and click on generate fingerprints, once this job is completed, click on the display interaction matrix to get the figure and for further analysis, you also can export the table into .csv file.