There are different strategies to avoid aggregation of iron oxide nanoparticles; grafting of organic molecules/surfactants, green synthesis using plant extracts, surface coating using inorganic materials. A rich literature is available about the topic.
I just crossed through this question and would like to share my experience in this area. There are a few ways to prevent the particles especially SPION from aggregation including controlling the particle size (usually below 150 nm), and coating the particles with some biocompatible agents like PEG, dextran, or surfactants, selecting the best solvent or dispenser for SPION, sonication, ...