Hello,

I’m using the DISCRETE package of BayesTraitsV2 to analyze two binary traits. I know how to do the LRT between the likelihood values of two modules, but I don’t know how to do the next steps. I’m confused about the result of dependent module. If the q12, q23…represent the transition rates between different states? Why these values in the results of ML and MCMC is so different? And how to get the likelihood value of this parameters as well as to do the LRT?

Thank you so much!

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