How do I search complete set of motifs of a particular protein (specifically, GIGANTEA from Arabidopsis thaliana)?

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Abhijeet Singh

Have you tried Motifscan, interproscan, prosite or Pfam?

Jooeun Lee

Thank you for your input.

I found something from the ones you have mentioned.

But I think there isn't sufficient information on GIGANTEA motif and so it is difficult to interpret its motif structure.

Can I get some help for the same?

Look below for details.

SMART

http://smart.embl-heidelberg.de/smart/show_motifs.pl?ID=Q6B4R7_ARATH

Interpro:

https://www.ebi.ac.uk/interpro/result/InterProScan/iprscan5-R20191104-024434-0010-80813480-p2m/

Pfam:

https://pfam.xfam.org/protein/Q9SQI2

Thank you.