I've got a list of genes that I would like to find transcription factor for. But when I looked the gene up on Genecard, there are so many to choose from (on some, the list goes up to 100s of TFs!). How do I select the transcription factor that would be effective??
You can download the TF gene list from the animalTFDB3 by the link below:
http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/download
Yao-Ming Chang I tried looking at the database that you have given but it just list the transcription factor. If I have a gene that to get the specific TF for, is there a way to go about doing that?
For example, if I want a transcription factor for HBA2 gene... what would be the transcription factor??
Settanan Plangsiri On the same website, they provide a TFBS prediction tool. Just paste the promoter sequences of HBA2 and the tool will give you a list of TFs and corresponding binding sites.
http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/tfbs_predict
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