I have lists of enriched terms from GSEA, STRING, KEGG and reactome analysis of proteomics data. Is there a way that I can combine the lists to get and visualize a composite list of enriched terms?
Hi Anand,
not sure to have what you expect, but you can do Venn diagrams (http://bioinformatics.psb.ugent.be/beg/tools/venn-diagrams).
fred
Hi Fred,
Thanks for your suggestion. As I mentioned, I have enriched terms from the different analysis. The idea was to see if I could make one combined list of the most important terms common in all the lists, with a statistical value, that adds to the robustness of the results than each individual analysis. I guess its a difficult proposition since the logic behind each type of analysis and how the enriched terms are determined is different.
Anand
Hi Anand,
I see that it's more difficult than I thought. pushing all the terms in only one list could make no sens. The best way would be to concatenate all terms in an excel sheet and align the results from your 3 analysis, and only keep all shared and relevant results. if you can't see what I mean, send me your 3 files, I'll return you only one.
fred
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