The molecule is glycosylated protein. I want to convert all molecule to pdbqt file, but the program i used only convert protein not sugar!
Could anyone help me?
Dear Ibrahim Farhani
You can do that by following simple steps:
Best Regards
Qamar Ul Islam
Hi dear Ebrahim. The new version of Pymol and Openbabel can do this, but I think MGLtools also can do this.
Try the open babel converter
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