because of: https://www.researchgate.net/post/Fourier_transform_of_AFM_images-what_does_FTT_show any further analysis of AFM curves/points/qnm/other may have no sense.
Thinking about L. Siewa answer I got feeling that I missed something. So, if you asking how to use software maybe F1 (manual/Help) button may help. Anyway I attached part of AFM help.