Hi RG members,
I am looking for a way to search a genome for a transcription factor (TF) binding site. Multiple studies have found that the TF binds to the consensus sequence DACCGGAAGTR so I would like to identify genes that have this sequence within 1000bp of their transcription state sites. I have found this site (http://motifmap.ics.uci.edu/) which does exactly what I want however, it does not have an option to find sites in a custom genome. I realise there are python programs available but I do not have any experience with this, I have some limited experience in R. Any suggestions of tools that I could use would be most appreciated. Thank you.