How can I find the genes which are connected with specific metabolic compound for special kind of bacteria?

03 March 2016 1 3K Report

I want to find Polaromonas naphthalenivorans genes which are connected with Stachyose compound

Hi Ziad,

If the genome of this bacteria is already sequenced, you can do a homology search, such as blast. You just need to generate a file containing the genes involved in stachyose biosynthesis (according to http://www.metacyc.org/META/new-image?type=PATHWAY&object=PWY-5337 just three) and perform BLAST search

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