I have sequence the genome of a Klebsiella pneumoniae and I am trying to find other Klebsiella pneumoniae genomes belonging to the same ST to use them for comparison.
I have used BLAST to find similar sequences but best matches resulted in different sequence types.
Hi,
You can try to find the sequence type you want in this list:
https://www.ncbi.nlm.nih.gov/genome/genomes/815
If the GenBank records do not have the information of sequence type you need, you may try to CrossMatch program to identify most similar genomes or BLAST, as you have already done.
Hi,
Thanks for your answer, it gave me a good idea.
What I did was to download all K. pneumoniae genomes and then use a program called Kleborate (https://github.com/katholt/Kleborate) and automatically type all the genomes. Now I have a database with all the uploaded genomes and their MLST.
Dear Mr. Fernando Lazaro Perona,
I would like to ask which platform that I can install kleborate? In windows or linux?
Thank you very much.
Dear Mr. Phuong,
You have to install it under Linux, but its quite easy.
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