How can I dock a protein with its cofactor using CLC Drug Discovery workbench so that I can find all the interactions individually in binding sites?
First you need to obtain license of CLC drug discovery which is valid only for 14 days. you need to have your protein in best possible energy and it can be minimized via CLC or chemdraw. you need to have your protein in mol format . use open babel for conversion. Then protein can be easily uploaded on workbench and rest of the steps are mentioned in the booklet which is quite explainatory..
Neha
First you need to obtain license of CLC drug discovery which is valid only for 14 days. you need to have your protein in best possible energy and it can be minimized via CLC or chemdraw. you need to have your protein in mol format . use open babel for conversion. Then protein can be easily uploaded on workbench and rest of the steps are mentioned in the booklet which is quite explainatory..
Neha
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