hello,
I created .ped and .info files, now i want to know how can i create a haploview map using gplink ? i need to know which order can i integrate in the server to obtain results? I need more details about the link below
http://pngu.mgh.harvard.edu/~purcell/plink/gplink.shtml
Hello Meriem,
what is the reason to create LD plot using gplink. If, haploview map you mean LD plot, of course. Simple way is to use Haploview.
I think I am doing the same as Merriem, generating haploview dataset using gPlink.
does integration of gPink and Haploview still possible?
I checked on the Plink website and the beta version of Haploview that supports gPlink is no longer available in Haploview site. I was wondering if Broad Institute removed that version from their site.
Hello Erwin,
if you have ped and info files, for import to Haploview use "Linkage Format" in welcome window. It should work.
--recode HV is only for case/control traits.
What if you have a quantitative phenotype?
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