It can be done with Chimera (free of charge - https://www.cgl.ucsf.edu/chimera/)
Probably the structure of the organic molecules should be optimized first to give more realistic values. Once the molecule is optimized with the method of your choice (probably it would depend on how big the system is ) you can open it with chimera. Chimera accepts many different formats.
When you open the molecule you should first generate the surface: Action/Surface/show
Then you can measure the volume and area: Tools/Volume Data/Measure Volume and Area.