I want to amplify a 4 kb-long fragment from HEK genomic DNA by PCR. To do this, I have designed 3 pairs of primers which are 20-25bp-long and their melting temperature is about 63°C for each primers. I used the Expand High Fidelity Taq from Roche and the MgCl2 Buffer. I choose 55°C as a Tm for the PCR program and I programmed 35 cycles. I tried it many times but I didn't get what I wanted. I also tried several combinations between my 3 pairs of primers (Forward 1 with Reverse 1, 2, 3...etc). I just get some a specific bands. Can anyone help me with it?

Thanks in advance for any advice.

Colette

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