How can convert fasta protein file to binary matrix(0,1)?

04 April 2019 1 4K Report

I have an align protein file in fasta format that i want to convert it to binary matrix(0,1). i did not find any software or webserver for doing this. would you mind helping or intruducing any program or webserver in this issue?

thanks

Ladan Mafakher

thanks so much for your anwser

Badges
Science topic

Similar topics
Mathematics
Algebra
Matrix

More Ladan Mafakher's questions See All

How can model 3D structure of protein that contain fatty acid tail?

Hello I have a protein that contain a palmitic acid tail which connect to serine amino acid of it's. how can I model this protein and which software I can use? thanks

02 March 2018 1,649 0 View

How can generate .xmp file by gmx hbond command?

Hello I have a problem with gmx hbond command. I use this command that available in gromacs documentation"14]gmx hbond -s md-ir.tpr -f md-ir-trj.xtc -num hbnum-apc3-ir.xvg -dist hbdist-apc3-ir.xvg...

01 February 2018 4,646 0 View

Can i use Modeller for fixing side chain residue in PDB file?

Hello everyone i want to use Modeller for repair side chain residue of my PDB file not missing atom. could i use Modeller for this issue? if yes, would you mind helping me how can i do this? thanks

11 December 2017 342 5 View

Can i use b-actin in real time PCR?

can i use b-actin as control gene in real time PCR? because in articles that i have, they use GAPDH as a control for real time pcr and b- actin for western blot. i do not know why and what is...

04 May 2016 4,258 10 View

How to classify strictly upper triangular matrices by similarity?

Let F be a field. Consider U, the set of n times n strictly upper triangular matrices in F. For X, Y in U, we call them similar if there exists some S, which is non-degenerate and upper...

01 March 2021 2,957 8 View

Is CD44 degraded in lysosome together with hyaluronan after CD44 mediated endocytosis of hyaluronic acid?

Also when RHAMM binds hyaluronic acid, they get internalized, will RHAMM also be degraded? Or both CD44 and RHAMM will be transferred back to the cell membrane? Asking for breast cancer cell line...

01 March 2021 8,169 2 View

Why is the sum of the elements in a row in a Q matrix equal to zero?

When explaining substitution models, the substitutions are expressed as Q matrix. Why is the sum of the elements in a row zero?

28 February 2021 3,864 3 View

Distribution of particles in metal matrix?

How would define the "good" and "poor" distribution of particles within the matrix. Is there a quantitative solution to assess the distribution of the particles, which then having denotation of...

28 February 2021 7,397 8 View

How to find a correlation between coordinates in a curvilinear coordinate system?

Hello. I have a skewed elliptical coordinate system (I use alternative elliptical coordinates). And I need to determine connections between coordinates in order to fetch a covariance matrix of...

28 February 2021 364 3 View

For modelling epoxy-based matrices (in composites), which model in ABAQUS is the most suitable, Concrete damaged plasticity or Drucker-Prager model?

I am working on developing a micromechanical FE model for predicting kink-band formation in UD composites. To model matrix plasticity, which model, out of Concrete Damaged Plasticity and...

28 February 2021 5,415 1 View

What are the methods used for CNT..?

Respected Professor's i hope you are doing well and happy. i need some information about carbon Nanotubes. before blending the CNT with the matrix the CNT has been introducing in some treatments....

24 February 2021 5,383 5 View

How can I generate random samples from Bingham distribution in R? How can I construct those symmetric matrices?

in the function rbingham(n,A) in R software how can I construct that A (symmetric) matrix?

24 February 2021 3,528 3 View

How does the injection volume impact LLOQ and ULOQ in regression analysis (LC-MSMS)?

Hello, I have run into an issue that has sparkled a debate at work: is the LLOQ/ULOQ impacted by injection volume under the following circumstances: 1) Same dilution factor of all samples 2)...

23 February 2021 9,159 3 View

Can I use FLEXBAR to detect and remove barcodes out of my short reads without demultiplexing ?

Hello, I have demultiplexed my short reads and I have removed the Illumina adapter left in the sequences and now I need to remove the barcodes used by the sequencing centre from my reads. I have...

22 February 2021 9,873 3 View