Ladan Mafakher

5 Questions 8 Answers 0 Followers

Questions related from Ladan Mafakher

How can convert fasta protein file to binary matrix(0,1)?

hi I have an align protein file in fasta format that i want to convert it to binary matrix(0,1). i did not find any software or webserver for doing this. would you mind helping or intruducing any...

04 April 2019 4,231 1 View

How can model 3D structure of protein that contain fatty acid tail?

Hello I have a protein that contain a palmitic acid tail which connect to serine amino acid of it's. how can I model this protein and which software I can use? thanks

03 March 2018 1,704 0 View

How can generate .xmp file by gmx hbond command?

Hello I have a problem with gmx hbond command. I use this command that available in gromacs documentation"14]gmx hbond -s md-ir.tpr -f md-ir-trj.xtc -num hbnum-apc3-ir.xvg -dist hbdist-apc3-ir.xvg...

02 February 2018 4,707 0 View

Can i use Modeller for fixing side chain residue in PDB file?

Hello everyone i want to use Modeller for repair side chain residue of my PDB file not missing atom. could i use Modeller for this issue? if yes, would you mind helping me how can i do this? thanks

12 December 2017 407 5 View

Can i use b-actin in real time PCR?

can i use b-actin as control gene in real time PCR? because in articles that i have, they use GAPDH as a control for real time pcr and b- actin for western blot. i do not know why and what is...

05 May 2016 4,313 10 View