I recommend the guide from the Centre for Reviews and Dissemination - York University (http://www.york.ac.uk/inst/crd/about_us.htm).
They provide basic general instructions for any kind of systematic review (including methods for meta-analysis), and instructions for specific subjects. You may want to look at: http://www.york.ac.uk/inst/crd/pdf/Systematic_Reviews.pdf
Another systematic review approach- EPPI-Centre (https://eppi.ioe.ac.uk/cms/). Different research questions may be answered by different methods. This includes review questions that can be answered by both quantitative and qualitative research approaches. You can check out the systematic review book:
Gough D., Oliver S., Thomas, J. (2012) an introduction to systematic reviews .
Another systematic review process is to utilise the software available from the Joanna Briggs Institute, associated with the University of Adelaide. This system provides information and tools for data collection, quality appraisal, data extraction, analysis and synthesis. You might want to look at the website: http://joannabriggs.org/sumari.html
I would recommend adhering to the processes outlined by the "Grading of Recommendations Assessment, Development and Evaluation" (GRADE) work group. They have developed a transparent, logical approach to grading quality of evidence and then strength of recommendations which can translate nicely to clinical practice guidelines. See their site for details: http://www.gradeworkinggroup.org/index.htm
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