Were the brains perfused with PFA before collection (e.g., by animal perfusion)? This would ensure some internal fixation in the tissue, but if they were in just PBS for hours, they are probably damaged, as fixation should be performed as soon as the tissue is collected.
This link might help to clarify: https://www.ndbbio.com/post/tissue_fixation
Hello Salma, since the tissues were perfused with PFA you may try to go ahead with your protocol, and hopefully there is no relevant damage. Fingers crossed!