I have downloaded PLINK 1.9 software, and with the help of command prompt I started PLINK, and arranged my data according to the .bim file format of Binary input format.
But now i am in dilemma, which command i have to give for this analysis?
Hi all, I am trying to calculate the curvatures of the cornea and compare them with Pentacam values. I have the Zernike equation in polar coordinates (Zfit = f(r, theta)). Can anybody let me...
03 October 2023 205 3 View
when we using the energy of batteries During discharge these ion move back to the cathode through the electrolyte releasing. But when we are not using the li-ion slowly lose their charge how and why ?
04 September 2023 6,800 3 View
Lithium-ion battery are using various applications in this world but it needs to work more hours with energy like a EV car goes 500 Km per full charge but i want increase the capacity of a battery...
04 September 2023 8,218 1 View
Hi All, I am trying to generate the 3D corneal surface from the Zernike Polynomials. I am using the following steps, can anyone please let me know whether they are accurate Step 1: Converted the...
25 August 2023 3,578 1 View
The plant was extracted by mixing 60g of powdered moringa oleifera into 300 mL of distilled water via the boiling method for 10 mins. Then the extract is filtered. The filtrate will be used to mix...
03 July 2023 4,270 3 View
Is it essential to consider the short columns in sloping ground buildings? I want to avoid the short-column effect in my research for sloping ground (hillside) building configurations. Can I do...
11 April 2022 2,783 0 View
As literature shows that speed breeding is effective in case of cereals. Can this technique useful for other plants especially for aromatic plants
08 August 2021 1,235 3 View
Dear all, Is IA-FEMesh extension is removed from 3D slicer? ( https://www.slicer.org/wiki/Modules:IA_FEMesh-Documentation-3.4). I am not able to find the extension in the current slicer...
02 September 2020 683 0 View
For starting any breeding methods, first we have to known its mode of reproduction. Can any one suggest some simple methods in this regards.
04 May 2020 1,765 0 View
As the lamiaceae members contains aroma, Is there any link between the aromatic oil and density of trichome.
04 March 2020 7,028 5 View
I have hapmap or Plink format. I want genotype binary -1/0/1 convert I want to create an input file in BGLR or BWGS to use gBLUP. If you have an R package or any other good method, I'd love to...
08 April 2024 8,268 2 View
I have this error message when running DEPICT. Could anybody comment on it? (py27env) bash-3.2$ /Users/soujin/Work/DEPICT2/src/python/depict.py...
13 March 2024 4,987 0 View
Hello, I need some help, I have a popset 2159029362 and would really love if someone can help me with this questions… Does someone have pink or any or tool to help me answer these? 1. How many...
07 February 2024 6,307 0 View
PLINK 1.9 has recently started generating .info and .ped files (needed as input in Haploview software) per chromosome from bfiles. The command being used in "plink--bfile --recode HV --out ". Is...
31 July 2023 3,327 0 View
I have been trying to generate .assoc file with the Fisher exact test parameter. But PLINK 1.9 is returning the error shown in the picture. I cannot figure out what is going wrong. Glad if...
31 July 2023 4,064 1 View
Hi, For a simulated genomic analysis, I am trying to use QMSim software. Can anybody tell me how I can convert QMSim-generated output files that are in *.txt format, to plink input format? If you...
20 December 2022 6,641 0 View
Hello i have been calculate some parameters of ROH in the summary List, like percentage, mean and count in Plink,...
19 September 2022 1,208 1 View
Hello, everyone! I have a .ped file like this: FAM 100026 0 0 1 -9 A B A A A B B B A B A A A B A B A A A... FAM 100032 0 0 1 -9 A A A A A B A B A B A B A A A B A A A... This .ped file is agreed...
30 August 2022 6,189 0 View
Hello everyone, I want to know that there is a difference between LD matrix and cross-covariance LD matrix of all SNP? Do you know how can I estimate cross-covariance matrix by using an LD...
21 June 2022 2,660 0 View
Hi everyone I am working on genotype data, I have bed, bim and fam files with the summary statistics of GWAS. Because the number of individuals are a lot, so I want to sample from my binary files...
14 June 2022 4,574 0 View