Have any one used Gromacs for SIMULATION?

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Can you suggest me the best de -nova genome assembly tools ?

I have sequenced the complete genome of a plant species using two technologies The estimated genome size using flowcytometer is estimated to be 300Mb 1. Illumina(mate pair) 2. Oxford Nanopore (for...

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What is the protocol for Isoelectric focusing of a Brain sample?

Protocol for IEF of rat Brain sample.

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I want to make silver nano particles from pomegranate peel for the first time in our lab can all of you suggest how to go about it?

Protocols for the production of silver nano particles from Pomegranate peel

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In cytoscape when an network is constructed on basis of what is this network constructed how to i basically i analyze the network?

How to analyse a network constructed trough cytoscape

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What method should be used to identify the protease that cleaves a glycoprotein?

The protein of interest is a glycoprotein and the 3D structure is not resolved yet.

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Gromacs first step of minimization ?

I have face this problem anyone help me how to solve this issue ?which is below Fatal error: There are inconsistent shifts over periodic boundaries in a molecule type consisting of 78 atoms. The...

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Are there instances where molecules with larger molecular weights exhibit greater mobility than those with smaller molecular weights?

Hi, I know that low molecular weight (MW) molecules generally tend to have higher mobility, while high molecular weight molecules tend to have lower mobility. However, in my experimental...

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For an in-vitro drug release study, what molecular weight cut-off (MWCO) dialysis bag is required for a 117 kDa protein?

kindly reply me. Thanking you in advance.

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How to start a Molecular Dynamics Simulation?

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Which will be the best software for the Hydration shell analysis with molecular dynamics?

I am using a windows system, what software I should use for hydration shell analysis with molecular dynamics?

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Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

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Can we patent a process flow diagram developed using a process simulator but no actual cases is carried out?

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CAD File of human's & rat's respiratory airways ?

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How to restart MD without using checkpint file in GROMACS?

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AutoGrid and Autodock 4.2.6 window opens for 1 second then closes and there is no output files?

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Justin Lemkul

GROMACS does not do docking.

Usha Talambedu

Thank you Doc

Dr. JUSTIN cOULD YOU PLEASE GUIDE ME... Gromacs for SIMULATION. What is Hardware requirement.

GROMACS will run on pretty much anything. The requirements depend on what your jobs are, but just about any modern computing cluster is fine for GROMACS simulations.