I am trying to estimate the null allele frequency in my Microsatellite data. For this purpose, I used Steven Kalinowski's software ML-Null.
You will find it here:
https://www.montana.edu/kalinowski/software/null-freq.html
Has anyone ever used it? If yes, can anyone suggest it for publication purpose?
The software is quite easy to operate; uses a Genepop input file. However, it lacks the manual or description about wich approach or model is used for Null allele freq. calculation.
Haven't used this one, but if it works fine for detecting null allele freqs I see no problem why it should not be suitable for publication purposes as well. But maybe double check the outcomes to be sure, e.g. using the R package PopGenReport (which specifies approaches in the documentation), e.g. see here: https://rdrr.io/cran/PopGenReport/src/R/null.all.r
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