Haplotype analysis for SNPs in different chromosome?

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Md. Mostafijur Rahman

Dear Dr. Nagendra Nath Das

, thanks for your kind information. But I was wondering can i do combined haplotype for these two SNPs on different chromosome? For Example, One SNP has two allele, 'C' and 'A' and the other SNP has 'T' and 'G'. In this case can i calculate the combined analysis for haplotypes 'C-T','C-G', 'A-T','A-G'?

Fadhaa Ali

Hi,

You cannot. They should be in the same chromosome so that you can construct their haplotypes by the use of a particular software such as PHASE.