I'm currently trying to stain for intracellular cytokines in mast cells, and have been having trouble getting my stains to show up by flow. I know that these cytokines are being produced, as measured by ELISA and RNA. I've also done nearly this exact same assay in B-cells without any issues, with a very clean dose-response curve. However, in B cells, I used a different stimulation, and I'm not seeing any of the cytokines I'm measuring by flow at all in a bone-marrow-derived mast cell population. My protocol is as follows:
1: Wash mast cells, plate an appropriate amount
2: Add Golgistop as per manufacturer's protocol
3: Add stimulation immediately after, incubate 4 hours at 37C
4: Stain, perm, stain, etc.
5: Run flow
Given that TLR4/LPS often needs to be internalized, is it possible that by adding Golgistop before the stimulation, I'm blocking that signaling? I'm thinking I will try to add golgistop after 2 of the 4 hours of my stim, but does anyone else have any ideas as to why I'm not seeing IC cytokine staining?
Edit: The only marker not showing up after staining is my IC cytokine marker. Everything else in the assay works fine.