Hello
we are trying to do some GATEWAY cloning backwards. We want to recover a destination clone from an expression clone - simple, I would have said 4 weeks ago. We take the expression clone (amp), add pDONR207 and make a BP reaction. After transforming into DB3.1 we select for amp and chloramphenical.
We get only colonies that carry both original plasmids. Sounds logical - assuming that both plasmids can be replicated in a single cell (I think i had heard previously that this is not neccessarily the case) and that transformation efficiency is high (quite possible).
We tried digesting the pDONR207 backbone before BP (I admit the digest was not perfectly complete). The results got no better at all.
Are we completely on the wrong track - or what is going on? Is our strategy in principle OK - do we just have to screen harder? Many
thanks for you advice, Henrik