I have cryosectioned a spheroid which was grown in collagen and agarose and then embedded in OCT Tissue Tek solution before freezing in a dry ice ETOH bath of liquid N2. The sections are very clean, easy to cut (20um thick) and I can visually see the spheroid on the SuperFrost Plus slide.
However when I perform immunofluorescence or H&E staining, I feel like I am washing away the complete section. I know that the Thermo Fisher SuperFrost slides which I use are designed for adhering to tissue - however is the spheroid too small/ too different to tissue that is is not sticking to the slide? (My spheroids are 200um in diameter).
Wondering if anyone has experienced something similar when staining sectioned spheroids. Thank you for any help in advance!