I have the trouble in the input file, conversion of PDB to gdb. If there any correct procedure for that?
you must go to following link:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/
This video might help you better. Check it
https://www.youtube.com/watch?v=kzJR2_XHkcM
hi Sugumari,
i am not sure weather Gromacs can convert pdb file to gdb..
you can convert .pdb to .gro .., or vice versa..
Can you send the example of .gdb file...?
I am not clear with the interpretation. I interpreted that the inhibition is competitive.
03 April 2018 3,784 0 View
Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1
17 August 2021 0 0 View
How to calculate the RMSD values for a MD simulation using MOE?
07 August 2021 0 0 View
20 June 2021 0 0 View
When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.
16 June 2021 0 0 View
effect of double bond on the flexibility of polymers
07 April 2021 0 0 View