-surf option on gromacs produces weird radial distribution?

Hey guys, the following command uses the -surf flag and it causes some unnormalized-looking g(r) (see attached png file): gmx_mpi rdf -s tpr.tpr -ref 'resname TST' -sel 'resname RER -f movie.xtc...

03 October 2020 4,025 2 View

Surface RDF in Gromacs?

Hello, I am trying to use the -surf option in gmx rdf in order to compute the rdf of certain molecules from the surface (nearest atoms) of my reference molecule . My script is: gmx rdf -s...

22 September 2020 5,097 10 View

COM pulling on gromacs?

Dear all, I am looking for a way to restrain the center of mass (COM) of two different molecules bathed in water, using GROMACS 2018. The only thing close I found on gromacs that does this is the...

07 September 2020 4,435 8 View

Do you know a company that distributes computerized questionnaires in African countries (for a fee of course)?

Hi, Do you know a company that distributes computerized questionnaires in African countries (for a fee of course)? Best wishes, Ya'akov

05 August 2018 9,031 3 View

A contaminant in mass spectrometry results - any idea?

We have an abundant contaminant in our MS results (Q-Exactive Plus). Like PEG, it has hundreds of instances in each run, each instance with a different parent mass and several charge states. Many...

29 January 2016 2,158 8 View

Air Quality/ Odor emergency response and management software?

Hi, I am looking for software to help regulators manage emergency response teams in case of extreme events of air pollution release or odor complaints from citizens. The software should: be...

27 September 2014 9,025 3 View

How can we carry out text classification using ML methods in WEKA for unbalanced classes?

When we do text classification using ML methods such as SMO in WEKA for unbalanced classes, e.g., if we have a table with a 95% value of 0 in the output column, then SMO always chooses 0 and...

14 April 2014 1,223 2 View

Micro-RNA genomic map

09 April 2013 9,931 2 View

PCR contamination

26 January 2013 1,975 8 View

shRNA stopped working

I want to knock down CSF-1 (M-CSF) in H358 human lung cancer cells. I bought shRNA from Sigma, a validated one, and checked that it has a seeding sequence in all 4 splicing variants of the CSF...

15 January 2013 9,077 6 View

No title

02 March 2021 3,060 3 View

What do you know about biotechnology art?

What do you know about biotechnology art?

02 March 2021 1,653 3 View

Which is the best place in the world for the plant biotechnology research?

I am searching for a good place for the Post Doc,

02 March 2021 4,053 3 View

How to separate water from glycerol solvent in a solvent recovery vacuum distillation column?

I am currently doing my third year design project. I have been assigned to design a glycerol recovery column in vinyl acetate monomer production. The process unit before the recovery column is an...

01 March 2021 9,525 4 View

Is CD44 degraded in lysosome together with hyaluronan after CD44 mediated endocytosis of hyaluronic acid?

Also when RHAMM binds hyaluronic acid, they get internalized, will RHAMM also be degraded? Or both CD44 and RHAMM will be transferred back to the cell membrane? Asking for breast cancer cell line...

01 March 2021 8,169 2 View

What is the most suitable server for predicting protein structures in bacteria?

I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...

28 February 2021 4,521 3 View

Have you ever experiencing air vent trouble in fermentation process?

Dear all, My research group is currently working with a 12-litre fermenter. Somehow, if we do the fermentation for more than 20 hours, the process will be more prone to contamination. Our current...

23 February 2021 1,908 2 View

How was your experience with Biomedical and Biotechnology Journal?

How was your publication experience with BBRJ in terms of peer review and reviewer comments. Did you find it fair and transparent ?

23 February 2021 3,810 6 View

How would I use a glycerol fixation to fix whole brain Drosophila tissue?

I need to take IF images with DAPI on a confocal but I need to use a glycerol fixation. Has anyone done this method before, if so how was it done? Thank you.

21 February 2021 3,081 3 View

How to revive a Hyphomicrobium strain?

11 February 2021 3,524 2 View