Hi Dear
i use AutoDock in windows7 but when i want run Autogrid4, i see this error:
sorry i can not or open Grid Parameter File (GPF) "C:/AutoDock"
what can i do?
Hello!
There might be many possibilities.
Check your pathname
Check permissions when working with C drive
Check if you need to place autodock.gpf in the C:/AutoDock path
Post the screenshot of the error to understand more clear.
Cheers.!
hi Dear kumar@
i attach screenshot of error.
i try many way but at last can not solve the problem.
i am to be confused
Hello Ali Kian Saei
From the error, I can see that there a space in your "AutoDock path"
Remove that space or rename it as AutoDock_path/autogrid.exe
It should work properly as long as you do not include any space in any of the paths.
All the best
hi Dear Nor Farrah Wahidah Ridzwan
thanks for your answer.
i do what you say and it is done and solve my problem.
but i see another error in AutoDock run:
" i am sorry ; i can not find or open "pro.A.map"
and
"FATAL error : "C:/AutoDock/autodock4.exe: i am sorry ; i can not find or open "pro.A.map"
thanks
I'm glad we were able to solve your initial problem.
For your second issue, I believe this usually occurs whenever you run AutoDock using Windows.
Here is my suggestion:
1) the moment you start up the AutoDockTools (the AutoDock GUI), change your Preferences (File>Prefences>Set)
2) change the Startup Directory to the path of your working folder (which contains your pdbqt and map files and click Set
3) run autodock
Hope this helps. All the best
Hi Nor Farrah Wahidah Ridzwan
thanks for your comment.
it is done and i can run AutoDock correctly.
Best
Autodock error
Same Problem persist with several attempt. Cant find any solution, tried many things.
How can we differentiate between calcite, dolomite, siderite, magnesite and ankerite minerals in carbonatite rocks in thin section under optical microscope?
07 August 2024 2,132 3 View
Hi, we have measured tryptic peptides using both DDA and DIA method on QExactive. In DDA replicates i saw unusual intensity drops occurring at the same sections of chromatograms in DDA replicates...
07 August 2024 3,218 4 View
Dear fellow researchers, I am currently working on a paper where I need to provide a reliable reference that defines and distinguishes between 3D mesh models and 3D city models. Although I am...
06 August 2024 9,986 2 View
Hello, Can anyone provide me with the absorption coefficient of methane gas at 7.7 um? Any reference?
06 August 2024 980 5 View
I am conducting a qualitative study that uses interviews to investigate the perceptions of teachers about a particular leadership practice and I am focusing on 3 schools which have a total number...
01 August 2024 8,457 10 View
Hello I am conducting a microstructural analysis of a soil treated with lime. The following sem images are of the untreated s1 and treated soil s3. The untreated soil contains quartz calcite...
01 August 2024 572 0 View
HI there, I've came across several articles discuss about random audit an Non random to tax evasion or compliance. Most of the articles is relating about effect of audit (random or non random)...
31 July 2024 5,309 7 View
Can we patent a process flow diagram developed using a process simulator but no actual cases is carried out? For example consider a process for certain product manufacture where a new process flow...
31 July 2024 781 1 View
How can we calculate the percentage of configuration interaction (CI) in the UV output data of the Gaussian program? for example: Excited State 17: Singlet-A 5.1359 eV 241.41 nm...
28 July 2024 9,165 2 View
Please, what is the memory consumption of the Matlab function quad tree decomposition procedure [S = qtdecomp(I)] with respect to the input set I?
27 July 2024 5,455 2 View
How to use and this is economical?
06 August 2024 3,160 2 View
When I run autogrid4 it says: autogrid4: ERROR: Unknown receptor type: "Cr" -- Add parameters for it to the parameter library first! Look forward to your reply.Thank you so much!
29 July 2024 488 0 View
Good day, I am a student trying to work on Autodock for a project regarding Ligand-DNA interaction so i am quite new to molecular docking. i have followed tutorials and did all the steps...
28 July 2024 2,136 4 View
During the preparation of a ligand molecule in autodock or openbabel Cl atom is not showing in the .pdbqt file whereas it was present in the pdb and sdf file. Due to this Cl atom is not showing in...
13 July 2024 3,486 6 View
Dear Docker community, I'm a beginner at using molecular docking, and I'm facing a problem when I want to open or drop a pdb file on Autodock tools. The folder is saved with the extension.pdb;...
05 July 2024 8,348 4 View
Hello everyone, I have been trying to understand the concept of performing docking for repurposing studies. I've watched a couple of tutorial videos about docking with Pyrx, but at some points, I...
29 June 2024 860 3 View
i'm carrying out molecular docking for a compound containing metal, Platinum, with 3T6A protein using Autodock 4.2.6 tool. However, i cannot run Autogrid to obtain .dpf file which i'm going to...
28 June 2024 7,050 7 View
I'm running virtual screening tests with AutoDock GPU and am trying to validate that my configuration (parameter file, search box settings based on the target, search parameters, etc.) is correct,...
26 June 2024 6,944 1 View
There is an error message "interface silicon/oxide not found in grid xxx.tdr file"
26 June 2024 5,551 0 View
I follow the protocol in this paper "Computational protein–ligand docking and virtual drug screening with the AutoDock suite" for the "Flexible Docking". Everything is smooth until I write the...
22 June 2024 3,089 2 View