DPD simulation: Where can one find scripts to convert atomistic or Martini CG to DPD system for biomolecules?

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Why might the impedance values for DI water and 0.1X PBS buffer solution exhibit a decreasing and increasing trend, respectively over time (HP 4194A)?

Hello everyone, I'm encountering an issue with my electrochemical impedance spectroscopy (EIS) measurements and would appreciate some insights. Experimental Setup: Electrodes: Gold interdigitated...

05 August 2024 3,783 2 View

How can I precipitate a protein from condition media ?

So I want to see is the level of a secreted protein in the condition media via western blotting What my doubt is 1. How much cells should I seed and what should be the volume of condition...

19 June 2024 1,927 1 View

By mistake my friend dipped Ag/AgCl reference electrode in KI instead of KCl now is is not working then what should we do to save the electrode?

this electrode can't be open.

13 May 2024 2,991 3 View

FAD containing Protein purification?

I am trying to express a FAD containing enzyme of mycobacteria in E.coli. I am able to purify the protein which is slightly yellow in color but it seems that my FAD is all unbound to the protein....

16 April 2024 6,912 1 View

How to calculate total mass flow rate of particle in DPM fluent if it is not mentioned in the paper to be validated?

I am working on cold spray technology and currently doing validation for discrete phase modelling. The total mass flow rate and initial velocity of the particles is not mentioned in the paper...

08 April 2024 9,612 4 View

How to plot 'Radial position away from the centerline Vs Particle impact velocity' distribution in DPM fluent?

I am currently validating a paper on Cold Spray technology and simulating the particle flow using 'Discrete Particle Modelling'. I got the particle tracks and the particle history data, but...

03 April 2024 9,465 2 View

How to make reduced form of NADPH?

I want to prepare reduced form of NADPH. I am using 100mM of Tris (pH8.0) to make the buffer but the absorbance is showing to be 1.6 at 340nm which should supposed to be 0.6. can someone please...

11 March 2024 4,629 3 View

What is an article?

need a. Suggestion for best article related to management studies in data science

07 March 2024 3,506 1 View

Can smear be removed by PCR cleanup or is there any PCR cleanup protocol to enhance the result?

I will be using the Himedia PCR cleanup protocol and kit, so if anyone has any hacks to reduce the smear, do let me know. I will be sending samples urgently for sequencing. The sequencing is...

03 January 2024 6,635 3 View

Are there specific biochemical tests designed to analyze the ADMET properties of a particular compound?

Are there specific biochemical tests designed to analyze the ADMET properties of compounds, providing insights into their Absorption, Distribution, Metabolism, Excretion, and Toxicity?

25 December 2023 4,699 2 View

Which distribution type should I use when calculating the average particle size from TEM image? and how to calculate the error ?

average particle size calculation from TEM

04 August 2024 2,921 1 View

How to start a Molecular Dynamics Simulation?

Is it possible to conduct a molecular dynamics simulation to see the effects of a specific carbohydrate on the structure of lipids (e.g., micelle structure)? I am a beginner in this field and plan...

03 August 2024 3,371 3 View

Who of all the Global Scientific community will help me Prof. Dr. Yoshida make way for TPEOM, MEC ~EMC to return the atmospheric gases to the norma ?

TEP presentation caption (The Environmental Project) Re: Why should Washington’s DC, or any country government point of location think of as nowadays of as to being 'tomorrow as to come! if it...

03 August 2024 2,484 1 View

How to load and plot 2D-PIV (particle image velocimetry) recorded velocity vector field in Techplot?

Dear Researchers I need to know, how to load and plot 2D-PIV (particle image velocimetry) recorded velocity vector field data in Tecplot? Thank You

02 August 2024 3,615 1 View

Which will be the best software for the Hydration shell analysis with molecular dynamics?

I am using a windows system, what software I should use for hydration shell analysis with molecular dynamics?

02 August 2024 3,143 4 View

Does the delta function actually make sense to use on point particles?

The delta function seems produce logical contradictions when analyzed on a fundamental level. I would be curious if anyone else agrees.

31 July 2024 10,109 3 View

CAD File of human's & rat's respiratory airways ?

Dear all, I am working on particle deposition in human's & rat's respiratory airways using CFD and I am looking for the 3D CAD file for my simulations (STEP or IGES format). If somone has such...

29 July 2024 1,092 2 View

How to restart MD without using checkpint file in GROMACS?

Dear All Gromacs User I would like to restart MD without using checkpint .cpt files? I heard there is a way for acheiveing this. Any input and sugegstions are most welcome. Thanking You Budheswar

29 July 2024 3,084 8 View

How to prepare a molecule for molecular dynamics calculations?

If I want to calculate molecular dynamics (Gromacs), do I first need to optimize the geometry of the molecule? For example, I first draw the molecule in Avogadro, and then what? I guess I can't...

28 July 2024 673 3 View

Can we convert a thousand of FASTA sequence in numeric form in .csv format? If yes kindly send me the script for the same?

I have a .text file for various FASTA sequence , and i want to convert these sequences into a numeric file which will be in .csv format. OR I want to extract physiochemical properties(features)...

25 July 2024 3,650 2 View