Does someone have a script to transform the output of Blast2GO to GSEA?

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Sharad Purohit

look up in bioclite website, there should be something. search nabble as well.

Alain Coletta

Not sure about how to convert the output from Blast2GO, however if you are using public or private Affy gene expression arrays you can use InSilico DB (https://insilicodb.org) to seamlessly export your datasets to the genepattern GSEA module, and to GenomeSpace which is integrated with Cytoscape.

Hope this helps.