I'm interested in using a Barley Affy array annotation, obtained with Blast2GO and converted to the GSEA program, for enrichment analysis and to represent the data with Cytoscape? I am also interested in alternatives.
Sharad Purohit
look up in bioclite website, there should be something. search nabble as well.
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Alain Coletta
Not sure about how to convert the output from Blast2GO, however if you are using public or private Affy gene expression arrays you can use InSilico DB (https://insilicodb.org) to seamlessly export your datasets to the genepattern GSEA module, and to GenomeSpace which is integrated with Cytoscape.
Hope this helps.
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